Saturday, July 3, 2010

Genes anticipation


In genetics, anticipation is a phenomenon whereby the symptoms of a genetic disorder become apparent at an earlier age as it is passed on to the next generation. In most cases, an increase of severity of symptoms is also noted. Anticipation is common in trinucleotide repeat disorders such as Huntington's disease and myotonic dystrophy where a dynamic mutation in DNA occurs. All of these diseases have neurological symptoms. Prior to the understanding of the genetic mechanism for anticipation, it was debated whether anticipation was a true biological phenomenon or whether the earlier age of diagnosis was related to heightened awareness of disease symptoms within a family.

Trinucleotide Repeats and Expansion

Trinucleotide repeats are apparent in a number of loci in the human genome. They have been found in introns, exons and 5' or 3' UTR's. They consist of a pattern of three nucleotides (e.g. CGG) which is repeated a number of times. During meiosis, unstable repeats can undergo triplet expansion (see later section); in this case, the germ cells produced have a greater number of repeats than are found in the somatic tissues.
The mechanism behind the expansion of the triplet repeats is not well understood. One hypothesis is that the increasing number of repeats influence the overall shape of the DNA, which can have an effect on its interaction with DNA polymerase and thus the expression of the gene.
Disease mechanisms
For many of the loci, trinucleotide expansion is harmless, but in some areas expansion has detrimental effects that cause symptoms. When the trinucleotide repeat is present within the protein-coding region, the repeat expansion leads to production of a mutant protein with gain of function. This is the case for Huntington's disease, where the trinucleotide repeat encodes a long stretch of glutamine residues. When the repeat is present in an untranslated region, it could affect the expression of the gene in which the repeat is found (ex. fragile X) or many genes through a dominant negative effect (ex. myotonic dystrophy).
In order to have a deleterious effect, the number of repeats must cross a certain threshold. For example, normal individuals have between 5 and 30 CTG repeats within the 3' UTR of DMPK, the gene that is altered in myotonic dystrophy. If the number of repeats becomes greater than 50, the person is only mildly affected - perhaps having only cataracts. However, meiotic instability could result in a dynamic mutation that increases the number of repeats in offspring inheriting the mutant allele. Once the number of copies reaches over 100, the disease will manifest earlier in life (although the individual will still reach adulthood before the symptoms are evident) and the symptoms will be more severe - including electrical myotonia. As the number progresses upwards past 400, the symptoms show themselves during childhood or infancy.

 

Examples of Diseases showing Anticipation

Some examples of diseases showing anticipation, and some of the corresponding repeat sequences.

Spinocerebellar ataxia

Spinocerebellar ataxia (SCA) is a progressive, degenerative, genetic disease with multiple types, each of which could be considered a disease in its own right. The first ataxia gene was identified in 1993 for a dominantly inherited type. It was called “Spinocerebellar ataxia type 1" (SCA1). Subsequently, as additional dominant genes were found they were called SCA2, SCA3, etc. Usually, the "type" number of "SCA" refers to the order in which the gene was found. At this time, there are at least 29 different gene mutations which have been found (not all listed).
Many SCAs below fall under the category of polyglutamine diseases, which are caused when a disease-associated protein (i.e. ataxin-1, ataxin-3, etc.) contains a glutamine repeat beyond a certain threshold. In most dominant polyglutamine diseases, the glutamine repeat threshold is approximately 35, except for SCA3 which is beyond 50. Polyglutamine diseases are also known as "CAG Triplet Repeat Disorders" because CAG is the codon which codes for the amino acid glutamine. Many prefer to refer to these also as polyQ diseases since "Q" is the one-letter reference for glutamine.

Signs and symptoms

Spinocerebellar ataxia (SCA) is one of a group of genetic disorders characterized by slowly progressive incoordination of gait and often associated with poor coordination of hands, speech, and eye movements. Frequently, atrophy of the cerebellum occurs, and different ataxias are known to affect different regions within the cerebellum.
As with other forms of ataxia, SCA results in unsteady and clumsy motion of the body due to a failure of the fine coordination of muscle movements, along with other symptoms.
The symptoms of an ataxia vary with the specific type and with the individual patient. Generally, a person with ataxia retains full mental capacity but may progressively lose physical control.



Genetics: A conceptual Approach & Problem Solving CD-ROM




CAUSES
The hereditary ataxias are categorized by mode of inheritance and causative gene or chromosomal locus. The hereditary ataxias can be inherited in an autosomal dominant, autosomal recessive, or X-linked manner.
  • Many types of autosomal dominant cerebellar ataxias are now known for which specific genetic information is available. Synonyms for autosomal dominant cerebellar ataxias (ADCA) used prior to the current understanding of the molecular genetics were Marie's ataxia, inherited olivopontocerebellar atrophy, cerebello-olivary atrophy, or the more generic term "spinocerebellar degeneration." (Spinocerebellar degeneration is a rare inherited neurological disorder of the central nervous system characterized by the slow degeneration of certain areas of the brain. There are three forms of spinocerebellar degeneration: Types 1, 2, 3. Symptoms begin during adulthood.)
  • There are five typical autosomal recessive disorders in which ataxia is a prominent feature: Friedreich ataxia, ataxia-telangiectasia, ataxia with vitamin E deficiency, ataxia with oculomotor apraxia (AOA), spastic ataxia. Disorder Subdivisions: Friedreich's ataxia, Spinocerebellar ataxia, Ataxia telangiectasia, Vasomotor ataxia, Vestibulocerebellar, Ataxiadynamia, Ataxiophemia, Olivopontocerebellar atrophy, and Charcot-Marie-Tooth disease.
  • There have been reported cases where a polyglutamine expansion may lengthen when passed down, which often can result in an earlier age-of-onset and a more severe disease phenotype for individuals who inherit the disease allele. This falls under the category of genetic anticipation.

Treatment

There is no known cure for spinocerebellar ataxia, which is a progressive disease (it gets worse with time), although not all types cause equally severe disability.
Treatments are generally limited to softening symptoms, not the disease itself. The condition is considered to be irreversible. A person with this disease will usually end up needing to use a wheelchair, and eventually they may need assistance to perform daily tasks.
The treatment of incoordination or ataxia, then mostly involves the use of adaptive devices to allow the ataxic individual to maintain as much independence as possible. Such devices may include a cane, crutches, walker, or wheelchair for those with impaired gait; devices to assist with writing, feeding, and self care if hand and arm coordination are impaired; and communication devices for those with impaired speech.
Many patients with hereditary or idiopathic forms of ataxia have other symptoms in addition to ataxia. Medications or other therapies might be appropriate for some of these symptoms, which could include tremor, stiffness, depression, spasticity, and sleep disorders, among others.
Both onset of initial symptoms and duration of disease can be subject to variation. If the disease is caused by a polyglutamine trinucleotide repeat CAG expansion, a longer expansion may lead to an earlier onset and a more radical progression of clinical symptoms.

Thursday, July 1, 2010

CLONING

Life Extension

http://www.slideshare.net/xulkifal/cloningpresentation of cloning


  1. watch video
  2. http://www.youtube.com/user/zulkifalyousaf#p/a/u/0/df287vPbrUs


  3. ZULKIFAL YOUSAF [email_address]
  4. Cloning




    • “ Cloning” in biology is the process of similar producing populations of genetically identical individuals that occurs in nature when organisms such as bacteria, insects or plants reproduce asexually.
  5. Types Of Cloning




    • Reproductive cloning
    • Therapeutic cloning
    • Recombinant DNA cloning
  6. Reproductive Cloning




    • Reproductive cloning is a type of cloning which is performed for the purpose of creating a duplicate copy of another organism.
    • In somatic cell nuclear transfer, scientists extract the nucleus of a somatic cell, a cell which can come from anywhere in the body, and insert it into an egg which has had its nucleus removed.
  7. Continued…




    • The egg is stimulated, and it begins dividing and growing, developing into an embryo which can be implanted into a gestational surrogate and carried to term.
    • It is also possible to manipulate the genetic material used in reproductive cloning using recombinant DNA technology to alter DNA.
  8. Therapeutic Cloning




    • Therapeutic cloning is cloning which is performed for the purpose of medical treatment. For example, it could theoretically be used to grow a replacement organ, to generate skin for a burn victim, or to create nerve cells for someone suffering from brain damage or a neurological condition.
  9. Formally, this type of cloning is called somatic cell nuclear transfer. It involves extracting the nucleus of a cell, and putting the nucleus into an egg which has been de-nucleated. Then, the egg is allowed to divide and grow. In therapeutic cloning, the growing egg is used as a source of stem cells, which are undifferentiated cells which can grow into a wide variety of different types of cells.
  10. RECOMBINANT DNA CLONING




    • The fragment of DNA to be amplified is first inserted into a cloning vector.
    • MOST COMMONLY USED VECTOR:-
    • The most popular vectors currently in use consist of either small circular DNA molecules (plasmids) or bacterial viruses (phage).
    • The vectors contain genetic information that allows bacterial DNA replication machinery to copy them.
    • After insertion of the foreign DNA, the plasmid or phage vector is re-introduced into a bacterial cell.
    • The growing bacterial culture replicates the foreign DNA, along with the vector, in hundreds of copies per cell.
  11. CONTINUE…




    • This process yields multiple, identical clones of the original recombinant molecule.
  12. USES OF RECOMBINANT DNA CLONING




    • Recombinant DNA cloning is used to produce genetic material in large enough quantities for scientific use. There are a variety of uses for this reproduced, or cloned, genetic material.
    • Microbial Cells
    • Isolation of Proteins
    • Identification of Mutations
    • Diagnosis of Hereditary Diseases
    • Transferring Genes Between Organisms
  13. Ethical Issues Of Cloning




    • Cloning has become a contentious ethical and scientific issue in some parts of the world.
    • Some people believe that life begins at conception, and they feel that reproductive cloning is unnatural and that it could potentially violate their religious beliefs.
  14. Several nations have passed resolutions to explicitly ban human cloning, out of concern about ethical issues.
  15. Advantages Of Cloning




    • Medical treatment is that it would allow doctors to grow replacements for missing and damaged body parts for their patients. This would eliminate organ and tissue shortages
    • Using cloned body parts would also eliminate the need for immunosuppressive drugs, and reduce the risk of rejection and other problems which are commonly associated with transplants.





    • Cloning research on mice has suggested that new nerve cells can be grown with reproductive cloning techniques and used to repair damaged brains, an application which could be useful for people with dementia, Alzheimer's disease, or strokes.Investigative Reports: The Human Cloning Race [VHS]



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